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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THCA cis rs9815925 1 rs60867652 chr3:184759421 C3orf70 chr3:184795840-184870802:- -0.23 -4.5 8.59E-6 Heschl's gyrus morphology
THCA cis rs6088813 1 rs6087698 chr20:33948919 CEP250 chr20:34042996-34099802:+ -0.15 -3.37 0.000804 Height
THCA cis rs6088813 1 rs6087698 chr20:33948919 CPNE1 chr20:34213968-34262539:- 0.3 5.95 5.17E-9 Height
THCA cis rs6088813 1 rs6087698 chr20:33948919 GDF5 chr20:33897002-34042568:- -0.18 -3.81 0.000154 Height
THCA cis rs6088813 1 rs6087698 chr20:33948919 UQCC chr20:33890383-33999833:- 0.32 10.23 2.48E-22 Height
THCA cis rs6088813 1 rs6087702 chr20:33995945 CEP250 chr20:34042996-34099802:+ -0.15 -3.42 0.000679 Height
THCA cis rs6088813 1 rs6087702 chr20:33995945 CPNE1 chr20:34213968-34262539:- 0.31 5.95 5.06E-9 Height
THCA cis rs6088813 1 rs6087702 chr20:33995945 GDF5 chr20:33897002-34042568:- -0.17 -3.76 0.000194 Height
THCA cis rs6088813 1 rs6087702 chr20:33995945 UQCC chr20:33890383-33999833:- 0.32 10.38 6.88E-23 Height
THCA cis rs6088813 1 rs6087703 chr20:33996433 CPNE1 chr20:34213968-34262539:- 0.3 5.92 6.14E-9 Height
THCA cis rs6088813 1 rs6087703 chr20:33996433 GDF5 chr20:33897002-34042568:- -0.18 -3.96 8.55E-5 Height
THCA cis rs6088813 1 rs6087703 chr20:33996433 UQCC chr20:33890383-33999833:- 0.32 10.26 1.86E-22 Height
THCA cis rs6088813 1 rs6087704 chr20:34001058 CPNE1 chr20:34213968-34262539:- 0.3 5.93 5.97E-9 Height
THCA cis rs6088813 1 rs6087704 chr20:34001058 GDF5 chr20:33897002-34042568:- -0.18 -3.96 8.7E-5 Height
THCA cis rs6088813 1 rs6087704 chr20:34001058 UQCC chr20:33890383-33999833:- 0.32 10.25 1.96E-22 Height